As Google Summer of Code draws to an end, I want to ensure that my project results are easy to locate and comprehend. The code can be found in these repositories and information on how to use it is included in the respective readme files: My personal GitHub repository following…

The last week of the project has flown by, but with Jet’s help I was able to make good progress. We were able to fix the issues with the composite reading by restructuring how we assembled the dictionary. Then we neatened the code in general and I wrapped it into functions. I also added a couple of extra warning steps, before Jet wrapped it into a stand-alone plugin.

This week was sadly less productive than I wanted it to be due to health reasons, but I am hoping to be able to use the remaining time before the finished code needs to be submitted to finish the prototype. Again, I worked on the compositions and was able to…

Since last week’s blog there has been further discussion of the time error that occurred with iGEM parts (https://github.com/SynBioDex/pySBOL2/issues/378) and two related issues #381 and #382 were created by Tom Mitchell to address the underlying problems. In short, downloading the parts from SynBioHub using pysbol2 led to a change in…

The final evaluation and with it the end of GSoC is fast-approaching and there is still a lot of work to be done. …

This week’s meeting was very interesting and with Jet’s help I was able to fix the problem of connecting to the Library Submit Plugin Server. We were even able to run it successfully using postman. However, it didn’t work using my personal SynBioHub instance. It connected and some action must…

The second evaluation is fast approaching and I am making steady progress on the plugin. The error last from last week’s blog entry was solved by using removing all of the packages that are routinely pre-installed on Python from the requirements.txt. …

This week I continued my work on plugins. After all of the errors mentioned in last week’s post were solved, Jet and I had a very insightful meeting on plugins. The Submit-Test-Plug that Jet had written now works exactly as intended and provides me with a basis for my own…

This week I spent most of my time debugging. In last week’s blogpost I described two errors: the first located in query_implementation.py and the second relating to the creation of composite DNA parts. …