Ahmet R ÖztürkOverall DesignAlmost all parts of the web tool is designed at this point. So, major components are:Jul 1, 2018Jul 1, 2018
Ahmet R ÖztürkSecurity of the web toolSince I want to create a (-n almost) fully customizable web tool, there are some security concerns. What if a user tries to remove the…Jul 1, 2018Jul 1, 2018
Ahmet R ÖztürkMobility of data (and its analysis)The idea behind the web tool is to make it accessible for people. If you want to keep either protocols or data for yourself, that’s totally…Jun 28, 2018Jun 28, 2018
Ahmet R ÖztürkUpload-specific steps of a generic toolIn order to make the tool generic, I also need to make data upload part generic as well. My initial design is only based on fastq.gz files…Jun 28, 2018Jun 28, 2018
Ahmet R ÖztürkCreating analysis steps, part of a protocolI replace the term workflow with protocol. We spent some time with Burak discussing the proper wording of terms, so, protocol seems to be a…Jun 27, 2018Jun 27, 2018
Ahmet R ÖztürkCustomized pipelineSo, this is the core of the approach of the web tool. I spent some time during the design process of the d3js-based interactive user…Jun 26, 2018Jun 26, 2018
Ahmet R ÖztürkWorkflow managementAlthough there are well established workflow management tools around, I’m developing my own for a couple of reasons. Due to the…Jun 25, 2018Jun 25, 2018
Ahmet R ÖztürkDesign choicesEvery choice has its consequences, so, I spent a significant amount of time thinking on the architecture of the web tool. I want something…Jun 25, 2018Jun 25, 2018
Ahmet R ÖztürkTechnical details on the tool … that will replace meI started writing in in Python3 and Django. I use Bootstrap 4 and D3js for the front-end. In order to make it easy-to-setup, I only use…Jun 20, 2018Jun 20, 2018
Ahmet R ÖztürkIdea behind the tool … to replace meYou can think of it like a game having both an engine and a map editor. So, main idea is to create a framework that will enable anybody to…Jun 20, 2018Jun 20, 2018
