GSoC 2020 — Integration of sequence visualization into SynBioHub

Org: National Resource for Network Biology (NRNB)

Project Links

Code: https://github.com/alicelh/sequence-view-plugin

Documentation: https://github.com/alicelh/sequence-view-plugin/wiki

Blogs: https://medium.com/@alice.menglh

Project Description

This project creates a sequence view plugin to visualize sequence and annotations of the page part in SynBioHub. It is a visualization plugin engine for SynBioHub to enhance the functional annotations of DNA sequence which are coordinated with the SBOL Visual standard.

Plugin Interface

Achieved Goals

  1. Integrate SeqViz into SynBioHub as a plugin.
  2. Show functional annotation for the sequence coordinated with the SBOL Visual standard.
  3. Implement interaction between SBOL glyphs and sequence view to better explore the sequence.

GSoC20 with NRNB