Min Dai – Medium

Min Dai

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Min Dai

Visualization in Single Cell Data Analysis

(updating …)

Dec 8, 2022

Visualization in Single Cell Data Analysis

Dec 8, 2022

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Min Dai

How to convert between Seurat/SingleCellExperiment object and Scanpy object/AnnData using basic…

Table of contents:

Feb 28, 2022

Feb 28, 2022

Min Dai

How to install the Arial font for python in linux

Hi, here are the codes to fix the errors for the annoying Arial font error when plotting figures in Python using the Arial font:

Apr 2

Apr 2

Min Dai

Top 20 Crime Movies I have ever watched

The Green Mile (1999)

Dec 29, 2023

Top 20 Crime Movies I have ever watched

Dec 29, 2023

Min Dai

How to install conda and change the default paths for new environment and package installation

Download the miniconda from the official website (https://docs.conda.io/projects/miniconda/en/latest/index.html):

Dec 14, 2023

Dec 14, 2023

Min Dai

How to install fasterq-dump

download from https://github.com/ncbi/sra-tools/wiki/01.-Downloading-SRA-Toolkit by wget…

Dec 14, 2023

Dec 14, 2023

Min Dai

Marker gene identification for single-cell RNA-seq data

Use COSG, which has both Python version and R version.

Jun 6, 2023

Jun 6, 2023

Min Dai

How to convert human Gene Symbols to mouse Gene Symbols

To retrieve the correspondences between human gene symbols and mouse gene symbols, we used the BioMart online tool provided by the Ensembl…

May 9, 2023

How to convert human Gene Symbols to mouse Gene Symbols

May 9, 2023

Min Dai

How to run bash commands in Python

We could use the subprocess library to run the bash commands:

Apr 14, 2023

Apr 14, 2023

Min Dai

How to download genomic coordinates for transposons/RepeatMasker from UCSC genome browser

Go to the following website (UCSC Genome Browser’s Table Browser):

Jul 23, 2022

How to download genomic coordinates for transposons/RepeatMasker from UCSC genome browser

Jul 23, 2022

Min Dai

Min Dai

Postdoctoral Research Fellow at Harvard Medical School and Broad Institute. Ph.D. and Bachelor in Bioinformatics.

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