PinnedMin DaiHow to convert between Seurat/SingleCellExperiment object and Scanpy object/AnnData using basic…Table of contents:Feb 28, 20221Feb 28, 20221
Min DaiHow to install the Arial font for python in linuxHi, here are the codes to fix the errors for the annoying Arial font error when plotting figures in Python using the Arial font:Apr 2Apr 2
Min DaiHow to install conda and change the default paths for new environment and package installationDownload the miniconda from the official website (https://docs.conda.io/projects/miniconda/en/latest/index.html):Dec 14, 2023Dec 14, 2023
Min DaiHow to install fasterq-dumpdownload from https://github.com/ncbi/sra-tools/wiki/01.-Downloading-SRA-Toolkit by wget…Dec 14, 2023Dec 14, 2023
Min DaiMarker gene identification for single-cell RNA-seq dataUse COSG, which has both Python version and R version.Jun 6, 2023Jun 6, 2023
Min DaiHow to convert human Gene Symbols to mouse Gene SymbolsTo retrieve the correspondences between human gene symbols and mouse gene symbols, we used the BioMart online tool provided by the Ensembl…May 9, 2023May 9, 2023
Min DaiHow to run bash commands in PythonWe could use the subprocess library to run the bash commands:Apr 14, 2023Apr 14, 2023
Min DaiHow to download genomic coordinates for transposons/RepeatMasker from UCSC genome browserGo to the following website (UCSC Genome Browser’s Table Browser):Jul 23, 2022Jul 23, 2022