New SciDAP Workflow: WGS Metagenomics — Taxonomic Classification and Functional AnalysisHow to: User-friendly metagenomic shotgun sequencing analysis in SciDAPJan 14Jan 14
CUT&RUN and CUT&Tag data analysis in SciDAPCUT&RUN and CUT&Tag are methods used to identify the DNA sequence where DNA binding proteins bind DNA in chromatin. Developed in the…Jul 2, 2024Jul 2, 2024
Live on BioRxiv: Methods Paper on scMultiome Multiome Data Analysis in SciDAPHow to guide for 10x scMultiome, scRNA-seq and scATAC-seq data analysis in SciDAP: Cell Ranger, Seaurat, Harmony, doublet finder and…Mar 10, 2024Mar 10, 2024
HOMER Motif Enrichment Analysis in SciDAPMotif analysis is used to identify short sequences (motifs) that are over-represented in target sequences compared to background. These can…Feb 21, 2024Feb 21, 2024
New SciDAP Workflow: 16S Metagenomic analysis with QIIME2How to run Qiime2 microbiome analysis in SciDAP: QC, Alpha rarefaction plots, taxonomic classification, differential analysis, PCOASep 27, 2023Sep 27, 2023
New SciDAP Workflow: Germline Variant Calling pipeline with GATK4How to do variant calling from Whole Genome Sequencing and Exome Sequencing data in SciDAPJul 26, 2023Jul 26, 2023
The single cell mess at NCBI: how GEO/SRA store 10x Genomics scRNA-seq data and how to load them…10x Genomics single cell workflowMay 26, 2023May 26, 2023
New SciDAP workflow: miRNA-seq analysisMicro RNA (miRNA) are small RNA molecules that play an important role in regulating gene expression. Data from sequencing experiments…Apr 26, 2023Apr 26, 2023
New SciDAP Application: QuantSeq™Next generation sequencing (NGS) has revolutionized research with the power to sequence a full genome in a single day. The technology has…Mar 1, 2023Mar 1, 2023
SciBox: Optimized Hardware for Faster NGS Data Analysis in SciDAPIn an earlier blog post, we talked about SciDAP architecture for processing NGS data. To enhance security and privacy of users’ data, we…Dec 16, 2022Dec 16, 2022
