Unveiling the Secrets of Mushrooms: A Predictive Journey with PredictEasy

Elsa Saji
7 min readDec 16, 2023

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The Enigmatic World of Mushrooms

Mushrooms, with their captivating shapes and mysterious allure, have been a source of fascination for centuries. From the enchanted forests to gourmet kitchens, these fungal wonders have intrigued humanity with their diverse forms and flavors. However, lurking beneath their earthy charm lies a potential danger that has puzzled foragers and chefs alike — the risk of selecting a poisonous mushroom. What if there was a tool that could demystify this enigma? Enter PredictEasy, a powerful predictive analysis tool that aims to unravel the edible and poisonous secrets hidden within the folds of a mushroom dataset.

Unlocking Nature’s Riddles: The Need for Predictive Analysis

As we delve into the captivating realm of mushrooms, a myriad of species reveals itself, each with its unique characteristics. The question that has baffled enthusiasts and experts alike is: How can we distinguish between the delectable and the deadly? This conundrum has led to the development of Predicteasy, a cutting-edge tool designed to harness the power of predictive analysis and machine learning algorithms.

The PredictEasy Promise: Can We Predict a Mushroom’s Fate?

Imagine having the ability to predict whether a mushroom is a culinary delight or a potential threat. PredictEasy promises just that — a journey into the heart of predictive analytics, where data becomes a compass, guiding us through the labyrinth of mushroom varieties. Can we truly unlock the secrets hidden within the fungal kingdom? The answer lies in the algorithms and methodologies employed by PredictEasy, a tool designed to make sense of complex datasets and reveal patterns that elude the naked eye.

PredictEasy operates on the principle that data, when meticulously analyzed, can unveil patterns and relationships that may elude the human eye. By utilizing machine learning algorithms, PredictEasy ingests a vast dataset of mushroom characteristics, ranging from cap color to spore print, and transforms this information into a predictive model.

The PredictEasy Experience: From Dataset to Decision

As we embark on this journey with PredictEasy, the tool takes us through a seamless process. It begins by ingesting a comprehensive dataset that encapsulates the nuances of various mushroom species. The algorithm then learns from this information, identifying patterns and correlations that might escape the untrained observer. The end result is a predictive model capable of classifying mushrooms into edible or poisonous categories.

Let’s first understand our data. The mushroom dataset is a multivariate categorical dataset with 22 features and 8124 instances. This data set includes descriptions of hypothetical samples corresponding to 23 species of gilled mushrooms in the Agaricus and Lepiota Family. Each species is identified as definitely edible, definitely poisonous, or of unknown edibility and not recommended. This latter class was combined with the poisonous one. The variable information is given below:

  • cap-shape: bell=b, conical=c, convex=x, flat=f, knobbed=k, sunken=s
  • cap-surface: fibrous=f, grooves=g, scaly=y, smooth=s
  • cap-color: brown=n, buff=b, cinnamon=c, gray=g, green=r, pink=p, purple=u, red=e, white=w, yellow=y
  • bruises?: bruises=t, no=f
  • odor: almond=a, anise=l, creosote=c, fishy=y, foul=f, musty=m, none=n, pungent=p, spicy=s
  • gill-attachment: attached=a, descending=d, free=f, notched=n
  • gill-spacing: close=c, crowded=w, distant=d
  • gill-size: broad=b, narrow=n
  • gill-color: black=k, brown=n, buff=b, chocolate=h, gray=g, green=r, orange=o, pink=p, purple=u, red=e, white=w, yellow=y
  • stalk-shape: enlarging=e, tapering=t
  • stalk-root: bulbous=b, club=c, cup=u, equal=e, rhizomorphs=z, rooted=r, missing=?
  • stalk-surface-above-ring: fibrous=f, scaly=y, silky=k, smooth=s
  • stalk-surface-below-ring: fibrous=f, scaly=y, silky=k, smooth=s
  • stalk-color-above-ring: brown=n, buff=b, cinnamon=c, gray=g, orange=o, pink=p, red=e, white=w, yellow=y
  • stalk-color-below-ring: brown=n, buff=b, cinnamon=c, gray=g, orange=o, pink=p, red=e, white=w, yellow=y
  • veil-type: partial=p, universal=u
  • veil-color: brown=n, orange=o, white=w, yellow=y
  • ring-number: none=n, one=o, two=t
  • ring-type: cobwebby=c, evanescent=e, flaring=f, large=l, none=n, pendant=p, sheathing=s, zone=z
  • spore-print-color: black=k, brown=n, buff=b, chocolate=h, green=r, orange=o, purple=u, white=w, yellow=y
  • population: abundant=a, clustered=c, numerous=n, scattered=s, several=v, solitary=y
  • habitat: grasses=g, leaves=l, meadows=m, paths=p, urban=u, waste=w, woods=d
  • dummy (constant variable)

(CLASS LABELS- edible=e, poisonous=p)

Using the Google sheets add-on PredictEasy a classification model was built. In order to know more about how to use the tool please refer to my previous blog posts (linked at the end of this blog). To interpret the visualizations that the tool provides click here.

The tool helped me build a classification model with 99% accuracy in just a few minutes. It also gave an interface in which I can feed the features of the given mushroom and predict if its edible. Let’s take a look into the results.

The predictive model achieved an accuracy of 99%, indicating that it is able to correctly classify the target class with a high level of accuracy.

The precision score of 99% suggests that the model has a low rate of false positives, meaning that it is good at identifying the positive class correctly.

The recall score of 99% indicates that the model has a low rate of false negatives, meaning that it is good at capturing instances of the positive class.

The F1 score of 99% is a balanced measure of precision and recall, indicating that the model performs well in terms of both metrics.

All these indicates that the model performs exceptionally well in predicting whether a mushroom is poisonous or not.

ROC Curve
Confusion Matrix

The ROC curve and Confusion Matrix supports the model’s accuracy.

XAI Plot
Feature Rank Plot

The XAI and Feature Rank plot suggests the main features that predict the edibility of a mushroom and the importance of these features. The feature scores provide insights into the importance of different features in predicting the target class. Among the features used in the model, gill size has the highest score of 0.2475, followed by population with a score of 0.2246. These two features seem to have the most significant impact on predicting the target variable.

The feature gill color also plays a crucial role in the model, with a score of 0.1912. This suggests that the color of the gills can provide valuable information in determining whether a mushroom is poisonous or not. Additionally, stalk shape and spore print color have scores of 0.1792 and 0.1574, respectively, indicating their importance in the prediction process.

Further investigation into the relationship between gill size and the likelihood of a mushroom being poisonous could provide valuable insights. It may be worth exploring if larger gill sizes are more indicative of poisonous mushrooms. Understanding the impact of population on the prediction could also be beneficial. Analyzing the distribution and density of mushroom populations could reveal patterns related to toxicity.

Based on the high accuracy, precision, recall, and F1 scores, the predictive model appears to be performing well. The identified top features can be used to gain a better understanding of the factors influencing the target class. Further analysis and experimentation can be conducted to validate the importance of the top features and explore potential improvements to the model. It is recommended to focus on the top features and investigate their relationships with the target class to gain deeper insights and potentially enhance the model’s performance.

A scenario created using real-time interface and its results

Conclusion: Navigating the Mushroom Wonderland with Predicteasy

Based on the high scores achieved by the model, it is evident that the selected features are highly informative in predicting the target variable. The business team should focus on the identified key features, such as gill size, population, and gill color, when assessing the toxicity of mushrooms. It is recommended to collect more data on these key features to further improve the accuracy and reliability of the predictive model. Regularly updating the model with new data and re-evaluating the feature importance can help ensure its effectiveness in predicting mushroom toxicity.

In the captivating world of mushrooms, where beauty and danger coalesce, PredictEasy stands as a beacon of technological innovation. By harnessing the power of predictive analysis, this tool invites us to explore the fungal kingdom with newfound confidence. As we unravel the secrets hidden within the folds of mushroom caps, we must also question the limitations and ethical considerations of relying on algorithms in our pursuit of culinary delights. PredictEasy beckons us to ponder these intricacies, providing both a tool for predictive analysis and a platform for reflection on the delicate balance between nature and technology.

References:

Decoding the Endgame: Navigating Tic-Tac-Toe’s Final Moves- https://medium.com/@elsasaji02/decoding-the-endgame-navigating-tic-tac-toes-final-moves-46fcce8dd6fb

Unraveling Predictive Patterns for CHP in Conventional Power Plants Through Data-Driven Insight- https://medium.com/@elsasaji02/unraveling-predictive-patterns-for-chp-in-conventional-power-plants-through-data-driven-insight-a5a1677b24e2

Mastering the Supply Chain: Optimizing Back Order Shipment Prediction Through Feature Engineering- https://medium.com/@elsasaji02/mastering-the-supply-chain-optimizing-back-order-shipment-prediction-through-feature-engineering-1f55b7e11627

Prescriptive Analysis of Employee Attrition: A Data-Driven Approach- https://medium.com/@elsasaji02/prescriptive-analysis-of-employee-attrition-a-data-driven-approach-1d1b595ba828

Dataset Source:

Mushroom. (1987). UCI Machine Learning Repository. https://doi.org/10.24432/C5959T

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