Jamshaid Shahir, Ph.D – Medium

Jamshaid Shahir, Ph.D

Jamshaid Shahir, Ph.D
in
Towards Data Science

PAGA Explained: Graphical Abstractions of Single-Cell Data

How a broader view of data can give us insights to its deeper meaning.

6 min readJun 6, 2024

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PAGA Explained: Graphical Abstractions of Single-Cell Data

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Jamshaid Shahir, Ph.D
in
Towards Data Science

Writing Code to Produce Images with ChatGPT

If images are just matrices of pixel values, can ChatGPT write code to produce matrices corresponding to meaningful imagery?

8 min readFeb 10, 2023

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Writing Code to Produce Images with ChatGPT

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Jamshaid Shahir, Ph.D
in
Towards Data Science

Data Imputation with MAGIC

Abra-kadabra-alakazam! Eliminate noise in your data like MAGIC!

8 min readMay 3, 2022

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Data Imputation with MAGIC

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Jamshaid Shahir, Ph.D
in
Towards Data Science

Multi-label Classification of Pokemon Types with TensorFlow

Create a Pokedex with deep learning

12 min readFeb 4, 2022

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Multi-label Classification of Pokemon Types with TensorFlow

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Jamshaid Shahir, Ph.D
in
Towards Data Science

Top 5 Single-cell Genomics Papers of 2021

A look back at some exciting papers this year in the age of Big Data

8 min readDec 23, 2021

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Top 5 Single-cell Genomics Papers of 2021

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Jamshaid Shahir, Ph.D
in
Towards Data Science

Determining the optimal Pokemon team for Pokemon Brilliant Diamond and Shining Pearl with Pulp

Use Linear Programming to be the very best, like no one ever was…

10 min readOct 24, 2021

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Determining the optimal Pokemon team for Pokemon Brilliant Diamond and Shining Pearl with Pulp

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Jamshaid Shahir, Ph.D
in
Towards Data Science

RNA Velocity: The Cell’s Internal Compass

Finding Direction in Single-cell RNA-sequencing Data

11 min readSep 1, 2021

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RNA Velocity: The Cell’s Internal Compass

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Jamshaid Shahir, Ph.D
in
Towards Data Science

Going for Gold: Predicting medal outcomes in the Olympics using Generalized Linear Modeling

A fun introduction to GLMs using an Olympics dataset

11 min readAug 6, 2021

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Going for Gold: Predicting medal outcomes in the Olympics using Generalized Linear Modeling

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Jamshaid Shahir, Ph.D
in
Towards Data Science

Why you should be using PHATE for dimensionality reduction

An intuitive and effective way to visualize the beauty and complexity of your data

11 min readJul 20, 2021

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Why you should be using PHATE for dimensionality reduction

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Jamshaid Shahir, Ph.D

Jamshaid Shahir, Ph.D

Computational Biologist who enjoys exploring the world through data and making science more accessible and friendly to everyone!

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