Navigating the FLiRT Variants: Understanding and Mitigating New COVID-19 Strains

Aboubakar Limangana
6 min readMay 22, 2024

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As the world continues to grapple with the evolving COVID-19 pandemic, new variants of the SARS-CoV-2 virus remain a significant concern. In the early spring of 2024, the emergence of the FLiRT variants has caught the attention of health experts and the public alike. These new subvariants of Omicron, including KP.2 and KP.1.1, have quickly become dominant in the United States, prompting discussions about their potential impact and how best to protect against them. This article delves into the origins, characteristics, and implications of the FLiRT variants, providing comprehensive insights into what they mean for public health.

The Emergence of FLiRT Variants

In April 2024, a group of new SARS-CoV-2 strains known as the FLiRT variants emerged, characterized by unique mutations in their spike proteins. These mutations differentiate FLiRT variants from earlier strains like JN.1, a descendant of the Omicron variant that was prominent in the U.S. during the winter of 2023–2024. By May 2024, KP.2, one of the FLiRT variants, accounted for 28.2% of COVID-19 infections in the U.S., making it the dominant strain. KP.1.1, another FLiRT variant, represented 7.1% of cases.

The origins of the FLiRT variants are not precisely known. They were first detected in U.S. wastewater by the Centers for Disease Control and Prevention (CDC), which monitors sewage to track viral activity in communities. This method can provide early warnings about rising or falling infection levels, even when individuals are asymptomatic. The FLiRT variants have also been identified in other countries, including Canada and the United Kingdom, highlighting their global spread.

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Characteristics and Implications of FLiRT Variants

The FLiRT variants possess two notable mutations in their spike proteins, which may enhance their ability to evade immunity from previous infections or vaccinations. Despite these new mutations, the FLiRT variants remain genetically similar to JN.1, offering some reassurance. During its prevalence, JN.1 caused milder symptoms than earlier pandemic variants, suggesting that the FLiRT variants might follow a similar pattern.

However, there are still uncertainties about the FLiRT variants, including whether they will cause more severe illness or if their symptoms will differ significantly from previous strains. The CDC notes that the severity of COVID-19 symptoms depends more on individual immunity and overall health than on the specific variant. This variability underscores the importance of maintaining robust health and immunity through vaccination and other preventive measures.

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Preventive Measures and Vaccination

Vaccination remains a cornerstone of COVID-19 prevention. Dr. Scott Roberts, an infectious diseases specialist at Yale Medicine, emphasizes the importance of staying up-to-date with COVID-19 vaccines. While vaccines may not completely prevent infection, they significantly reduce the risk of severe illness, hospitalization, and death. The updated monovalent vaccine, designed for the XBB.1.5 variant, has shown efficacy against JN.1 and is expected to offer some protection against the FLiRT variants as well.

Particularly for individuals over 65, who are at the highest risk for severe COVID-19 outcomes, vaccination is crucial. The CDC recommends that eligible seniors receive the updated vaccine and a booster shot four months later. This strategy aims to bolster immunity, especially in anticipation of potential seasonal surges in infections.

In addition to vaccination, other preventive measures remain effective. These include avoiding close contact with sick individuals, strategic masking, proper hand hygiene, improving ventilation in indoor spaces, and staying informed about local COVID-19 transmission levels. Antiviral treatments like Paxlovid, which target non-spike parts of the virus, are expected to remain effective against the FLiRT variants, providing an additional layer of defense.

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Monitoring and Future Outlook

Continuous monitoring of COVID-19 variants through wastewater analysis and genomic surveillance is critical in detecting and responding to emerging strains. The unpredictable nature of SARS-CoV-2 mutations means that public health strategies must be adaptable and informed by the latest data. Experts, including Dr. Roberts, acknowledge that the virus will continue to mutate, posing ongoing challenges.

One of the pressing questions is whether the FLiRT variants will evolve further before the winter, a season typically associated with higher infection and hospitalization rates. The inclusion of FLiRT strains in future COVID-19 vaccines could be a crucial step in mitigating their impact. As new data emerges, health authorities will need to adjust their recommendations and strategies to protect public health effectively.

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The emergence of the FLiRT variants underscores the ever-evolving nature of the COVID-19 pandemic. These new subvariants, with their distinctive mutations, highlight the virus’s ability to adapt and evade immunity. While the current evidence suggests that FLiRT variants might not cause more severe illness than previous strains, their rapid spread necessitates vigilance and proactive measures.

Vaccination remains a key strategy in preventing severe outcomes, particularly for vulnerable populations. Alongside vaccines, maintaining preventive practices such as proper hygiene, ventilation, and awareness of local transmission levels is essential. The ongoing surveillance and research into SARS-CoV-2 will continue to inform public health responses, ensuring that we can navigate the challenges posed by new variants like FLiRT.

As we move forward, it is crucial to stay informed and adaptable, relying on scientific evidence to guide our actions. The lessons learned from the past years of the pandemic will help us better manage current and future challenges, ultimately leading to a more resilient and prepared society.

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Frequently Asked Questions

Q1: What are the FLiRT variants of COVID-19, and how did they emerge?

The FLiRT variants are new subvariants of the Omicron strain of SARS-CoV-2, the virus that causes COVID-19. They include variants such as KP.2, which became the dominant strain in the United States by the third week of May 2024, accounting for 28.2% of COVID-19 infections, and KP.1.1, which made up 7.1% of cases.

These variants were first detected in U.S. wastewater by the Centers for Disease Control and Prevention (CDC), which uses sewage testing to monitor viral activity in communities. The exact origins of the FLiRT variants are unknown, but they have since been identified in other countries, including Canada and the United Kingdom.

These variants have mutations in their spike proteins, potentially allowing them to evade immunity from previous infections or vaccinations.

Q2: What impact do the FLiRT variants have on COVID-19 symptoms and severity?

The FLiRT variants have two new mutations in their spike proteins that might help them evade immunity, but they remain genetically similar to the previous JN.1 variant. While JN.1 caused milder symptoms during its prevalence, it is not yet clear if the FLiRT variants will result in more severe illness.

The CDC notes that COVID-19 symptoms and disease severity usually depend more on an individual’s immunity and overall health than on the specific variant. Therefore, while the FLiRT variants may spread more easily due to these mutations, there is no definitive evidence yet to suggest they cause more severe symptoms compared to previous strains.

Q3: How can I protect myself against the FLiRT variants?

Vaccination is the primary strategy to protect against COVID-19, including the FLiRT variants. Staying up-to-date with the latest COVID-19 vaccines significantly reduces the risk of severe illness, hospitalization, and death.

The updated monovalent vaccine, designed for the XBB.1.5 variant, is expected to offer some protection against the FLiRT variants. Additionally, individuals over 65, who are at higher risk for severe outcomes, are particularly encouraged to get vaccinated and receive booster shots as recommended.

Other preventive measures include avoiding close contact with sick individuals, strategic masking, proper hand hygiene, improving ventilation, and staying informed about local COVID-19 transmission levels. Antiviral treatments like Paxlovid, which target parts of the virus that do not change much with mutations, should remain effective against the FLiRT variants.

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Aboubakar Limangana
Aboubakar Limangana

Written by Aboubakar Limangana

Curious explorer, finding joy in words. Let's dive into the endless sea of knowledge and let curiosity guide your journey. https://holidaywhisper.com