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Raster based zonal statistics can take really long when the number of polygons increase. For about 35000+ polygons it takes nearly 3 hours on my machine. But same data in QGIS z0nal statistics can run in less than 10 mins.

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Pratyush Tripathy

PhD student at UC Santa Barbara. Shares content related to geospatial analysis and machine learning. Twitter: @i_pratyusht