rebelCoderinPython in Plain EnglishGenome Toolkit. Part 3: building statistical data (k-mer frequency)Biologists can use k-mer analysis to identify conserved sequences across different species. Let’s write such an algorithm.Jan 2, 2023Jan 2, 2023
rebelCoderinPython in Plain EnglishGenome Toolkit. Part 2.1: Identifying, fixing, and testing a bugIdentifying, fixing, and testing a bugDec 11, 2022Dec 11, 2022
rebelCoderinPython in Plain EnglishTips & Tricks: A faster search for patterns (loop, list, regexp)In this article, we are going to take a look at one of the algorithms we wrote in Genome Toolkit series, Part 2, and attempt to optimize…Nov 30, 2022Nov 30, 2022
rebelCoderinPython in Plain EnglishGenome Toolkit Part 1: Project SetupWelcome to the new series, called “Genome Toolkit”. In this series, we will write a set of tools, that will help us find and build…Oct 2, 2022Oct 2, 2022
rebelCoderinPython in Plain EnglishGenome Toolkit Part 2: In Dearch of PatternsFirst function — counting patternsOct 2, 2022Oct 2, 2022
rebelCoderGetting started in Bioinformatics: A step-by-step guide.A guide and advice on how to get started, or how to transition into Bioinformatics for people with biology or programming backgrounds.Aug 31, 20201Aug 31, 20201
rebelCoderinPython in Plain EnglishBioinformatics in Python: Tips & Tricks: (Hamming Distance)Let’s take a look at how we can program Hamming Distance algorithm in three different waysAug 16, 2020Aug 16, 2020
rebelCoderinPython in Plain EnglishBioinformatics Tools Programming in Python with Qt: Part 2.DNA Engine project structure and class setup.Jun 24, 2020Jun 24, 2020
rebelCoderinPython in Plain EnglishFrom Python to Rust: Part 3.Python dictionary, Rust HashMap and a DNA Reverse Complement function.Jun 23, 2020Jun 23, 2020
rebelCoderinPython in Plain EnglishFrom Python to Rust: Part 2Strings, Functions, and Crates/ModulesJun 4, 2020Jun 4, 2020