Andrea Telatinin#!/ngs/shDownloading NGS datasets using NextflowA simple to use pipeline to download FASTQ files from NCBI or EBI, which serves as a good advertisment for my favourite workflow manager2 min read·Jul 29, 2022----
Andrea Telatinin#!/ngs/shManage shared software with environment “modules”How to setup “module load” in your shared Linux server2 min read·Jun 12, 2020----
Andrea TelatinStoring command line Git credentialsA short note on avoiding typing your password at every push1 min read·Apr 16, 2019----
Andrea Telatinin#!/ngs/shCompressing FASTQ files for long term storageThe raw output of NGS experiments should be backed, and format-specific compressor like “dsrc2” comes handy for this3 min read·Feb 7, 2019----
Andrea Telatinin#!/ngs/shA simple introduction to XML and JSONTwo popular formats to store structured data5 min read·Nov 27, 2018----
Andrea Telatinin#!/ngs/shMerging Illumina lanes with a Bash scriptThis article describes a Bash script to perform a simple task with some controls and best practices.2 min read·Oct 15, 2018----
Andrea Telatinin#!/ngs/shPigz: a faster alternative to gzip for big filesUsing multiple threads to compress files but maintaining compatibility with gunzip2 min read·Oct 2, 2018--1--1
Andrea Telatinin#!/ngs/shIs a Bash variable set?Preventing unbound variables is good, but we need a way to tell if a variable has no content or has never been initialized2 min read·Sep 27, 2018----
Andrea Telatinin#!/ngs/shA short introduction to Git and GitHubThe minimum workflow for keeping file revisions under control5 min read·Jun 27, 2018----
