Published inbiosyntaxWhy are there rectangles in my plots with Seurat v3.2.x? | Pipette and KeyboardIf you updated Seurat recently, you might find your FeaturePlot() and DimPlot() giving plots that look pixelated instead of the circular…Jan 14, 2021Jan 14, 2021
Published inbiosyntax101 excuses to indulge yourself with more coffeeI consider myself to be moderately addicted to coffee: I slurp a mug of coffee to start my day, and when in certain days, I take another…Jul 26, 2020Jul 26, 2020
Published inbiosyntaxDependency issue: In Conda, with SCENICI’ve been working with pySCENIC in the recent couples of months. It’s a tool that is meant to uncover gene sets that are controlled by…Aug 4, 2019Aug 4, 2019
Published inbiosyntaxpsutil, python, and iccI used to dislike dependency management because there are so many things that require root or are mysteriously incompatible with each…Apr 5, 2019Apr 5, 2019
Published inbiosyntaxBe a deTeXtiveSelf-handicapping can be quite productive on those non-urgent things. Recently, I noticed a LaTeX template, Awesome CV, so I was thinking…Apr 2, 2019Apr 2, 2019
Published inbiosyntaxStrangled by factorsI am exaggerating, but sometimes stringsAsFactors is almost this deadly. I work with genomic data, and a common quest in my job is to…Mar 28, 2019Mar 28, 2019
Published inbiosyntaxDealing with dependency without sudo like a dummy (again)The more I work with Linux, the more I encounter dependency issues. This is of course not too big a surprise, but it can be painful…Mar 3, 2019Mar 3, 2019
Published inbiosyntaxReverse and find complement sequence in RRecently, I am continuously being amazed by how a seemingly simple task is actually implemented in a sophisticated way. I guess I am just…Dec 20, 2018Dec 20, 2018
