Learn about Cancer with Code

Learn about Cancer with Code

Simon Tse

Protein Function Prediction — From Motif to Network

Introduction

May 27

Protein Function Prediction — From Motif to Network

May 27

Simon Tse

Predicting Protein Function — Turning Protein Sequence to Motif

Introduction

May 20

Predicting Protein Function — Turning Protein Sequence to Motif

May 20

Simon Tse

Protein Function Prediction — PIK3AP1

Introduction

Apr 8

Protein Function Prediction — PIK3AP1

Apr 8

Simon Tse

Protein Function Prediction — Motifs

In last post, I have identified a magic number 36 that gives the maximum number of combinations with 25 amino acids.

Oct 2, 2023

Protein Function Prediction — Motifs

Oct 2, 2023

Simon Tse

Protein Function Prediction — Ngram

In last post, I covered the CAFA train data set used in Kaggle competition and gave you an overview of what the data set is like and which…

Sep 18, 2023

Protein Function Prediction — Ngram

Sep 18, 2023

Simon Tse

Protein Function Prediction — CAFA Data Set

In last post, I wrote about a recent Kaggle Competition on Protein Function Prediction. It is about using protein sequence to predict the…

Sep 4, 2023

Protein Function Prediction — CAFA Data Set

Sep 4, 2023

Simon Tse

Protein Function Prediction

After taking a hiatus, it is time to get back to my exploration of cancer biology. In past posts, my focus was to explore the mechanism of…

Aug 21, 2023

Protein Function Prediction

Aug 21, 2023

Simon Tse

Detour: Graph Analysis [5]

May 24, 2023

Detour: Graph Analysis [5]

May 24, 2023

Simon Tse

Detour: Graph Analysis [4]

More on weighted graph

May 10, 2023

Detour: Graph Analysis [4]

May 10, 2023

Simon Tse

Detour: Graph Analysis [3]

Weighted graph

Apr 26, 2023

Detour: Graph Analysis [3]

Apr 26, 2023

I studied operation research and statistics. Now I am using my knowledge to study cancer biology. I set out with a personal agenda because my parents succumbed to this illness and I want to understand it better. Hopefully, someone out there can also learn more about cancer.
Editors
Simon Tse
Try to apply my ML/NLP knowledge to problems I am interested in and create a narrative with the data. Current Interest: Cancer Biology

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