Anubrata Dasget FASTQ files from NCBITo understand signaling pathways, we intend to find networks using WGCNA. For this purpose, we require RNA-seq data from cancer samples at…May 2, 2023
Shripurna GangopadhyayDownload fastq files from NCBI without SRA toolkitIf like me, you are also new to bioinformatics and stuck on the very first step of your analysis because SRA toolkit won’t cooperate, then…Feb 26, 2023Feb 26, 2023
In#!/ngs/shbyAndrea TelatinDownloading NGS datasets using NextflowA simple to use pipeline to download FASTQ files from NCBI or EBI, which serves as a good advertisment for my favourite workflow managerJul 29, 2022Jul 29, 2022
Shyaman JayasundaraHow to download an NGS dataset from an online archive? 🧬TL;DR: A simplified guideJun 20, 2021Jun 20, 2021
Anubrata Dasget FASTQ files from NCBITo understand signaling pathways, we intend to find networks using WGCNA. For this purpose, we require RNA-seq data from cancer samples at…May 2, 2023
Shripurna GangopadhyayDownload fastq files from NCBI without SRA toolkitIf like me, you are also new to bioinformatics and stuck on the very first step of your analysis because SRA toolkit won’t cooperate, then…Feb 26, 2023
In#!/ngs/shbyAndrea TelatinDownloading NGS datasets using NextflowA simple to use pipeline to download FASTQ files from NCBI or EBI, which serves as a good advertisment for my favourite workflow managerJul 29, 2022
Shyaman JayasundaraHow to download an NGS dataset from an online archive? 🧬TL;DR: A simplified guideJun 20, 2021
InStar GazersbySixing HuangFive Commands Build Two NCBI APIs on the Cloud via PulumiIn my previous articles “Serve NCBI Taxonomy in AWS, Serverlessly” and “Build Your Own GraphQL GenBank in AWS”, I outlined my approaches…Mar 24, 2021
InCodeXbySixing HuangBLAST on the Cloud with NCBI’s ElasticBLASTBuild an analytic pipeline with ElasticBLAST, SNS, and DataBrew on AWSJun 17, 2021
InStar GazersbySixing HuangBuild Your Own GraphQL GenBank in AWSThe size of a scientific study: GB of raw data, which needs to be extracted into MB of Excel tables, probably gets written into KB of a…Mar 13, 2021
