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Epic “Crossover” Between AlphaFold 3 and GPT-4o’s Knowledge of Protein Data Bank Entries

Exploring how GPT-4o’s knowledge of the Protein Data Bank coupled to systems like AlphaFold 3 could allow for new ways to search and study biomolecular structures.

LucianoSphere (Luciano Abriata, PhD)
TDS Archive
12 min readDec 17, 2024

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If you are into bioinformatics and data analysis for biology, you will find this article quite inspiring right away.

More broadly for AI scientists, they will find here ways to probe an LLM by pushing it to hallucinate, and then finding ways to overcome this limitation.

Introduction

The Protein Data Bank (PDB) serves as a comprehensive repository for three-dimensional structural data of biological macromolecules, providing invaluable insights into the molecular underpinnings of biological processes. Its mere existence is what allowed AI models like AlphaFold to be developed!

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TDS Archive
TDS Archive

Published in TDS Archive

An archive of data science, data analytics, data engineering, machine learning, and artificial intelligence writing from the former Towards Data Science Medium publication.

LucianoSphere (Luciano Abriata, PhD)
LucianoSphere (Luciano Abriata, PhD)

Written by LucianoSphere (Luciano Abriata, PhD)

https://www.lucianoabriata.com | Scientific writing, technology integrator, programming, biotech, bioinformatics.| Have a job for me? Contact me in ES FR EN IT

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