Simon Tse – Medium

Simon Tse

Simon Tse
in
Learn about Cancer with Code

Protein Function Prediction — From Motif to Network

Introduction

3 min readMay 27, 2024

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Protein Function Prediction — From Motif to Network

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Simon Tse
in
Learn about Cancer with Code

Predicting Protein Function — Turning Protein Sequence to Motif

Introduction

3 min readMay 20, 2024

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Predicting Protein Function — Turning Protein Sequence to Motif

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Simon Tse
in
Learn about Cancer with Code

Protein Function Prediction — PIK3AP1

Introduction

2 min readApr 8, 2024

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Protein Function Prediction — PIK3AP1

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Simon Tse
in
Learn about Cancer with Code

Protein Function Prediction — Motifs

In last post, I have identified a magic number 36 that gives the maximum number of combinations with 25 amino acids.

4 min readOct 2, 2023

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Protein Function Prediction — Motifs

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Simon Tse
in
Learn about Cancer with Code

Protein Function Prediction — Ngram

In last post, I covered the CAFA train data set used in Kaggle competition and gave you an overview of what the data set is like and which…

4 min readSep 18, 2023

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Protein Function Prediction — Ngram

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Simon Tse
in
Learn about Cancer with Code

Protein Function Prediction — CAFA Data Set

In last post, I wrote about a recent Kaggle Competition on Protein Function Prediction. It is about using protein sequence to predict the…

3 min readSep 4, 2023

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Protein Function Prediction — CAFA Data Set

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Simon Tse
in
Learn about Cancer with Code

Protein Function Prediction

After taking a hiatus, it is time to get back to my exploration of cancer biology. In past posts, my focus was to explore the mechanism of…

3 min readAug 21, 2023

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Protein Function Prediction

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Simon Tse
in
Learn about Cancer with Code

Detour: Graph Analysis [5]

4 min readMay 24, 2023

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Detour: Graph Analysis [5]

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Simon Tse
in
Learn about Cancer with Code

Detour: Graph Analysis [4]

More on weighted graph

2 min readMay 10, 2023

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Detour: Graph Analysis [4]

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Simon Tse
in
Learn about Cancer with Code

Detour: Graph Analysis [3]

Weighted graph

7 min readApr 26, 2023

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Detour: Graph Analysis [3]

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Simon Tse

Simon Tse

Try to apply my ML/NLP knowledge to problems I am interested in and create a narrative with the data. Current Interest: Cancer Biology

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