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AI Quick-Select Tool

AI Quick-Select Tool

In June 2023, we integrated Meta’s AI model, SAM: Segment Anything, into WEBKNOSSOS, enabling users to segment cells in EM data with just…
Go to the profile of Albane le Tournoulx de la Villegeorges
Albane le Tournoulx de la Villegeorges
Volume annotations with WEBKNOSSOS

Volume annotations with WEBKNOSSOS

In this tutorial, we will explore the annotation features of WEBKNOSSOS. We will cover everything from opening and annotating a published…
Go to the profile of Albane le Tournoulx de la Villegeorges
Albane le Tournoulx de la Villegeorges
Automated Neuron Reconstruction

Automated Neuron Reconstruction

Creating a fully automated neuron reconstruction and Connectome matrix from EM images for meaningful biological analyses with Voxelytics.
Go to the profile of Tom Herold
Tom Herold
Latest
Cell biology exercises with WEBKNOSSOS

Cell biology exercises with WEBKNOSSOS

Explore the brain in 3D at high resolution, identify cell processes, and recognize synapses
Go to the profile of Albane le Tournoulx de la Villegeorges
Albane le Tournoulx de la Villegeorges
Neuroanatomy exercises with WEBKNOSSOS

Neuroanatomy exercises with WEBKNOSSOS

Credits: Prof. David Berson from Brown University
Go to the profile of Albane le Tournoulx de la Villegeorges
Albane le Tournoulx de la Villegeorges
Printing neurons in 3D from WEBKNOSSOS

Printing neurons in 3D from WEBKNOSSOS

For the Connectomics conference, we wanted to create neuron sculptures to showcase the beauty and complexity of the brain through art. As…
Go to the profile of Albane le Tournoulx de la Villegeorges
Albane le Tournoulx de la Villegeorges
Interview with Prof. David Berson

Interview with Prof. David Berson

David Berson, professor at Brown University, is best known for his pioneering research on retinal neurons, especially for discovering the…
Go to the profile of Albane le Tournoulx de la Villegeorges
Albane le Tournoulx de la Villegeorges
A story about collaboration, continents, and the struggles of big data

A story about collaboration, continents, and the struggles of big data

Embark on a journey with two scientists in London as they navigate the challenges of managing large datasets from a serial electron…
Go to the profile of Albane le Tournoulx de la Villegeorges
Albane le Tournoulx de la Villegeorges
BEHIND THE SCENES OF WEBKNOSSOS

BEHIND THE SCENES OF WEBKNOSSOS

Today, we chat with Philipp Otto. Philipp has been one of the principal developers of WEBKNOSSOS for a decade and will share his story …
Go to the profile of Albane le Tournoulx de la Villegeorges
Albane le Tournoulx de la Villegeorges
Feature highlights of WEBKNOSSOS from 2023

Feature highlights of WEBKNOSSOS from 2023

2023 was a year full of new features for WEBKNOSSOS, with exciting additions that enhanced our product. From AI-powered quick-select tools…
Go to the profile of Albane le Tournoulx de la Villegeorges
Albane le Tournoulx de la Villegeorges
CREATING ANIMATIONS WITH WEBKNOSSOS

CREATING ANIMATIONS WITH WEBKNOSSOS

We are excited to introduce a new feature in WEBKNOSSOS for creating animations of your data.
Go to the profile of Albane le Tournoulx de la Villegeorges
Albane le Tournoulx de la Villegeorges
INTRODUCING SEGMENT STATISTICS IN WEBKNOSSOS

INTRODUCING SEGMENT STATISTICS IN WEBKNOSSOS

We are pleased to announce that you can now access segment statistics in WEBKNOSSOS. For scientists analyzing and annotating microscopy…
Go to the profile of Albane le Tournoulx de la Villegeorges
Albane le Tournoulx de la Villegeorges
Introducing 4D datasets for time series in WEBKNOSSOS

Introducing 4D datasets for time series in WEBKNOSSOS

WEBKNOSSOS just added support for time series datasets, opening up a new dimension in your data exploration. Now, you can not only view…
Go to the profile of Albane le Tournoulx de la Villegeorges
Albane le Tournoulx de la Villegeorges
Showing and annotating data with an iPad

Showing and annotating data with an iPad

Using WEBKNOSSOS on an iPad offers two key advantages: seamless data visualization on the go and intuitive annotation with the Apple…
Go to the profile of Albane le Tournoulx de la Villegeorges
Albane le Tournoulx de la Villegeorges
Pen Tablets and WEBKNOSSOS

Pen Tablets and WEBKNOSSOS

TUTORIAL — Today, I want to share helpful tips on using pen tablets for efficient data annotation with WEBKNOSSOS.
Go to the profile of Albane le Tournoulx de la Villegeorges
Albane le Tournoulx de la Villegeorges
COMPARATIVE CONNECTOMIC STUDIES AMONG SPECIES

COMPARATIVE CONNECTOMIC STUDIES AMONG SPECIES

In 2022, Sahil Loomba et al. conducted a study using volume electron microscopy (EM) to compare synaptic connectivity in the mouse…
Go to the profile of Albane le Tournoulx de la Villegeorges
Albane le Tournoulx de la Villegeorges
Automation and interoperability

Automation and interoperability

Tutorial — Today, we will use the WEBKNOSSOS UI to download data as a Tiff stack and learn how to automate this process with Python.
Go to the profile of Albane le Tournoulx de la Villegeorges
Albane le Tournoulx de la Villegeorges
New AI-based quick segment tool in WEBKNOSSOS

New AI-based quick segment tool in WEBKNOSSOS

We are excited to announce the integration of Meta’s new AI model, SAM: Segment Anything, into WEBKNOSSOS. Designed with flexibility and…
Go to the profile of Albane le Tournoulx de la Villegeorges
Albane le Tournoulx de la Villegeorges
Data sharing with WEBKNOSSOS

Data sharing with WEBKNOSSOS

Permissions, collaborative annotations, and public access
Go to the profile of Albane le Tournoulx de la Villegeorges
Albane le Tournoulx de la Villegeorges
Self-hosted data for WEBKNOSSOS

Self-hosted data for WEBKNOSSOS

Sharing and working with large 3D image data can be very tedious without the right software. WEBKNOSSOS makes this very easy. Free accounts…
Go to the profile of Norman Rzepka
Norman Rzepka
Organize your data in folders

Organize your data in folders

We recently added folder structures to WEBKNOSSOS, which allow you to have your datasets structured, organized, and easily accessible.
Go to the profile of Albane le Tournoulx de la Villegeorges
Albane le Tournoulx de la Villegeorges
REBRANDING WEBKNOSSOS

REBRANDING WEBKNOSSOS

WHY DID WE GO THROUGH A REBRANDING? We redesigned our brand to better reflect our identity as a young, experienced and innovative team. We…
Go to the profile of Albane le Tournoulx de la Villegeorges
Albane le Tournoulx de la Villegeorges
Feature highlights of WEBKNOSSOS from 2022

Feature highlights of WEBKNOSSOS from 2022

The visualization, sharing and annotation capabilities of WEBKNOSSOS have grown a lot over the last year. In this article, we will be…
Go to the profile of Albane le Tournoulx de la Villegeorges
Albane le Tournoulx de la Villegeorges
Comparing Array Tomography with Serial Block-face Electron Microscopy

Comparing Array Tomography with Serial Block-face Electron Microscopy

Array tomography (AT) and Serial Block-face Electron Microscopy (SBEM) are two microscopy techniques that work in a similar way and are…
Go to the profile of Albane le Tournoulx de la Villegeorges
Albane le Tournoulx de la Villegeorges
Reconstructing a kiwi fruit… with SBEM (sort of)

Reconstructing a kiwi fruit… with SBEM (sort of)

How would you explain SBEM/volume EM and 3D reconstruction to your grandparents?
Go to the profile of Albane le Tournoulx de la Villegeorges
Albane le Tournoulx de la Villegeorges
Data Streaming with webKnossos Libs

Data Streaming with webKnossos Libs

A while ago we released our open-source Python library for working with webKnossos datasets and annotations. Our library makes it easy to…
Go to the profile of Albane le Tournoulx de la Villegeorges
Albane le Tournoulx de la Villegeorges
Using Zarr Datasets with webKnossos

Using Zarr Datasets with webKnossos

Discover how you can view, stream, and annotate your existing Zarr datasets with webKnossos bringing the life sciences community together.
Go to the profile of Tom Herold
Tom Herold
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