#!/ngs/sh

A bioinformatic example of a for loop

The idea to check if some condition is true before executing some commands is very simple and useful.

Best practice to avoid common errors in Bash scripts, preventing execution if errors occur: “set -euo pipefail”

Short reads data sets can be automatically downloaded from the Linux terminal

I noticed that several shell script would be simpler and more powerful if they adopted some pattern matching, but this technique so widely…

An introduction to arguments passed from the user to our shell scripts.