SBOL Workflows

Google Summer of Code 2017

Work Product

This blog is my work product for the Google Summer of Code. I have annotated all of my entries with links to GitHub issues and pull requests in the SynBioHub repository, so that the features I discuss are linked to code that I wrote…

August 21st — 25th

Coding Period

Back to school this week! Since I was starting school and winding down, I didn’t work on the project very much this week.

Monday, August 21st

August 14th — 18th

Coding Period

Monday, August 14th

After getting back from IWBDA, I started working on some more UI bugs that I found over the course of the week. I still don’t quite have the sharing functionality working, but I am taking a…

August 7th — 11th

Coding Period

Monday, August 7th

I finished changing all of the function calls on Friday, but I was still experiencing a lot of trouble with showing shared parts. One of the main issues was that there are many places where…

July 31st — August 4th

Coding Period

Tightening the integration between the Web of Registries and SynBioHub was one of the big features added this week. I also tackled the ownedBy and other predicates that foiled me last week and came out successful. As the IWBDA conference…

July 24th — 28th

Coding Period

Addressing bugs in the Web of Registries, fixing UI issues in SynBioHub, and planning the remainder of my Google Summer of Code are all big issues this week.

Monday, July 24th

July 17th — 21st

Coding Period

A short week this week due to travel, but we hosted a focus group of target users and got some valuable data. I also put some finishing touches on the Web of Registries and made UI adjustments after the focus group.

July 10th — 14th

Coding Period

Monday, July 10th

I spent this morning working on ontology reasoning for graph queries in Virtuoso. Theoretically, we should be able to query SBOL objects which are linked or described using ontologies and receive…

July 3rd — 7th

Coding Period

Web of Registries and group functionality were the biggest parts of this week. I lost a 1 1/2 days and a chunk of code to a confluence of git and backup nightmares, but managed to recover a lot of the work.

Monday, July 3rd