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Why are there rectangles in my plots with Seurat v3.2.x? | Pipette and Keyboard

Why are there rectangles in my plots with Seurat v3.2.x? | Pipette ...

If you updated Seurat recently, you might find your FeaturePlot() and DimPlot() giving plots that look pixelated instead of the circular…
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Yen-Chung Chen
101 excuses to indulge yourself with more coffee

101 excuses to indulge yourself with more coffee

I consider myself to be moderately addicted to coffee: I slurp a mug of coffee to start my day, and when in certain days, I take another…
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Yen-Chung Chen
Compiling with libxml in MacOS Catalina

Compiling with libxml in MacOS Catalina

The problem
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Yen-Chung Chen
Dependency issue: In Conda, with SCENIC

Dependency issue: In Conda, with SCENIC

I’ve been working with pySCENIC in the recent couples of months. It’s a tool that is meant to uncover gene sets that are controlled by…
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Yen-Chung Chen
psutil, python, and icc

psutil, python, and icc

I used to dislike dependency management because there are so many things that require root or are mysteriously incompatible with each…
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Yen-Chung Chen
Be a deTeXtive

Be a deTeXtive

Self-handicapping can be quite productive on those non-urgent things. Recently, I noticed a LaTeX template, Awesome CV, so I was thinking…
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Yen-Chung Chen
Migration

Migration

Hello guys,
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Yen-Chung Chen
Strangled by factors

Strangled by factors

I am exaggerating, but sometimes stringsAsFactors is almost this deadly. I work with genomic data, and a common quest in my job is to…
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Yen-Chung Chen
Dealing with dependency without sudo like a dummy (again)

Dealing with dependency without sudo like a dummy (again)

The more I work with Linux, the more I encounter dependency issues. This is of course not too big a surprise, but it can be painful…
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Yen-Chung Chen
Reverse and find complement sequence in R

Reverse and find complement sequence in R

Recently, I am continuously being amazed by how a seemingly simple task is actually implemented in a sophisticated way. I guess I am just…
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Yen-Chung Chen
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